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MS Defense: Bridging the Gap Between Biomechanics and Modern Computer Architecture: Analyzing Bottlenecks in a Human Eye Simulation
Hana Chitsaz
IRB-4107 or https://umd.zoom.us/j/9044992425?pwd=SnRpL3R0ams5T09ucW9HSjF2eGIxQT09&omn=93779044141
Thursday, April 17, 2025, 11:30 am-1:30 pm
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Abstract

Finite element analysis (FEA) is a crucial tool in biomechanical simulations, enabling the study of complex biological systems under various conditions. FEBio, an open-source FEA software designed for biomechanics and biomedical research, is widely used for such applications. However, its computational performance across different workloads remains an important consideration for researchers seeking efficiency and scalability. This thesis evaluates FEBio’s performance using system-level metrics, profiling tools, and comparative analysis across biomechanical simulation workloads. A case study on a finite element model of the human eye, from the glaucoma treatment study that inspired this project, provides a practical demonstration of FEBio’s computational behavior under realistic conditions. By identifying performance bottlenecks, analyzing their underlying causes, and proposing potential optimizations, this research contributes to improving the efficiency and resource utilization of biomechanical simulations. Furthermore facilitating more efficient and computationally feasible studies in the fields of bioengineering and biophysics.

Bio

Hana Chitsaz is a graduating master’s student in computer science at the University of Maryland, College Park, under research advisor Dr. Bahar Asgari. She received her Bachelor of Science degree in computer science, with a citation from the Honors Humanities College and minors in Business Analytics and Persian Studies, in Fall of 2023 from the University of Maryland, College Park. Hana is a member of the Computer Architecture and Systems Lab (CASL) where her research focuses on finite element analysis, workload profiling, and simulation software optimization and modeling. She is also interested in exploring various intersections with data science, machine learning, and health sciences. She has a passion for teaching and has been a teaching assistant for numerous classes in Computer Science and Business Analytics departments. In her spare time, she plays the violin, enjoys nature, and travels.

This talk is organized by Migo Gui